PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G04100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 378aa    MW: 38646.6 Da    PI: 8.0741
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G04100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.72e-42952332125
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksa 94 
                      +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +ss+++ s ++a +s 
  LPERR11G04100.1  95 PAAKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSSSAAASPRAAPPSF 188
                      6789*****************************************************************9997777777777655555555555 PP

              TCP  95 akskksqksaasalnlakesr..............akarararer 125
                      +++ + +  aa++l + ++++              a + +r+r+r
  LPERR11G04100.1 189 HHQFQHDVAAAAMLGFPHHHHhhllaqppphqdpgAGEFMRKRYR 233
                      566666666677999999777577777777777775555555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.349101155IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-37101196IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEQQAAGGAA PSSSTSNSTN SSRSTSDHHA AAAAQHHHHA FYYAGAPAAG ATMPAPASFM  60
GSLAMVPSSA PAPAAAQVQA VEPESQKKAA LVAAPAAKRP TKDRHTKVEG RGRRIRMPAL  120
CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV SLRSSSAAAS  180
PRAAPPSFHH QFQHDVAAAA MLGFPHHHHH HLLAQPPPHQ DPGAGEFMRK RYREGGADDL  240
FKDNAAAASR HEDTDGGGGG ENEQKARAAA APPASPMWAV GPNTGGGGGG GAAFWMQPAW  300
AFAGGGNTVQ APLQFMTRSA FAGAVTMADN NNNSSSSNLG MLAALNAGGE QQQEGQPPEM  360
DHHRRANGGG GGGAASPQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616519.11e-102PREDICTED: transcription factor PCF3
SwissprotQ53PH21e-104PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A0D9XPL80.0A0A0D9XPL8_9ORYZ; Uncharacterized protein
STRINGORGLA11G0044900.11e-103(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.19e-39TCP family protein